CDS

Accession Number TCMCG051C30085
gbkey CDS
Protein Id XP_024466776.1
Location complement(join(9247734..9247961,9248208..9248936,9249069..9249368,9250050..9250107,9251018..9251161,9251284..9251540,9253046..9253252,9254324..9254497,9255319..9255386,9256548..9256606,9258009..9258084,9258186..9258291,9258376..9258485,9259171..9259335,9259441..9259526,9260177..9260241,9260745..9260792,9261569..9261688,9261839..9261914,9262004..9262101,9262219..9262351,9262436..9262551))
Gene LOC7459994
GeneID 7459994
Organism Populus trichocarpa

Protein

Length 1140aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024611008.1
Definition DNA mismatch repair protein MSH1, mitochondrial isoform X2 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA mismatch repair protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000002        [VIEW IN EMBL-EBI]
GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007005        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009408        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032042        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTACTGGTTAGCAACTAGAAATGCCGTCGTTTCACTTCCCAAGTGGCGCTCCTTCGCTCTCCTCCTCCGTGCTCCTTTCAAATGCAGTTCACTTGGCCTGTCGCCACCGCCTCTCAGGATCGGACAGGCTCAACCTATTTATTGCTTTAAAAATCCGAAAGGAACCGCAAGAAATAGCAAGAAATCTAAAGCATCCAATAGTGTTCTCGACGATAAGGATCTTTCACACATTATATGGTGGAAGGAGAATTTGCAGCGGTGTAAGAAGCCTTCCACTGTTAATCTGGTTAAAAGGCTTATGTATTCCAATTTGCTCGGCTTGGATGCTAGCTTGAAAAATGGGAGTTTGAAGGAAGGAAATCTCAACTGGGAAATATTGCAATTCAAGTCAAAGTTTCCACGCGAGGTTTTGCTCTGCAGGGTTGGGGATTTCTATGAAGCCATCGGAATAGATGCTTGTATTCTTGTTGAATATGCTGGTTTAAATCCTTTTGGTGGGCTGCGATCTGATAGCGTTCCTAGAGCTGGCTGCCCTGTTGTGAATCTTCGGCAAACTTTAGATGACTTGACACGTAATGGGTATTCAGTGTGCATAGTGGAGGAGGTTCAGGGTCCAACACAAGCTCGTTCACGTAAAGGTCGTTTCATTTCTGGGCATGCACGTCCAGGGAGTCCATACGTTTTTGGACTTGTTGGGGTTGATCATGATCTTGAATTTCCAGAACCAATGCCCGTGGTTGGGATATCTCAATCAGCAAGGGGTTATTGCATGATCTCAGTCTTAGAGACCATGAAAACATATTCATTAGAGGATGGTCTGACTGAAGAGGCTTTGGTTACCAAGCTTCGTACTTGTCAGTACCACCATCTATTCCTTCATTCATCCTTGAGACACAATTCCTCAGGAACTTGTCGTTGGGGAGAGTATGGTCGGGGTGGCTTGTTGTGGGGAGAATGTAACGGCAGATATTTTGAGTGGTTTGAAGGAGATCCTGTCACTGAGCTTTTATTCAAGGTCAGGGAGCTTTATGGTCTTGATGATAAAGTTGGGTTCAGAAATGCTTATGTGTCTTCAGAAAACAGGCCCAGACCATTACACCTTGGAACGGCAACACAAATTGGTGCCATACCAACAGAAGGAATTCCTTGTTTATTAAAGGTGTTACTTCCATCAAATTGCACAGGTCTACCAGAACTGTATGTCAGAGATATGCTTCTCAACCCTCCTGCTTATGAAATTGCATCAACAATTCAAGCAACATGCAAACTTATGAGCAATATAACATGCTCAATTCCGGAGTTCACTTGTGTGTCCTCTGCAAAGCTTGTGAAGCTACTTGAACAGAAGGAAGCCAATCATATTGAGTTTTGTAGAATAAAAAATGTACTTGATGAAATATTGTTCATGTATAGAAACTCTGAGCTCAATGAAATACTGAAATCATTGATGGATCCTGCTTGGATGGCAACTGGTTTGAAAATCGACTTTGAGACATTAGTTAATGAATGTGAATGGGCTTCAGGCAGAATTTCTGAAATGATTTCCCTAGATGGGGAAAGTGATCAAAAGATAAGTTCTTGTCCTGTTGTACCAAGTGAATTTTTTGAGGATATGGAGTCTTCATGGAAAGGTCGTGTGAAGAGGGTCCATATAGAGGAGGAATTTTCAGAAGTGGAAAAGGCTGCACAGGCCTTATCTTTAGCAGTCACTGAAGATTTCATTCCTATCATTTCAAGAATAAAAGCAACCACATCCCCCTTTGGTGGTCCAAAGGGAGAAATATTGTATGCTCGAGAGCATGAAGCTGTTTGGTTCAAGGGAAAACGGTTTGCACCAGCAGTATGGGCTGGTACCCCCGGGGAAGAACAAATTAAACAGCTTAAACCTGCTGTAGATTCTAAAGGTAGAAAAGTTGGCGAGGAATGGTTCACTACAATTAAGTTGGAGGATGCTTTAACGAGGTATCATGATGCAGGCGAGAAAGCAAAAGCAAAGGTTTTGGAATTGTTTAGGGGGCTTTCTGCTGAGTTACAAACAAAAGTCAATATCCTTGTCTTTGCATCAATGGTGCTTGTCATTGCAAAGGCATTATTTGCTCATGTGAGTGAAGGGAGACGGAGGAAATGGGTTTTTCCCACTCTTACTGGGTTCAATGATTCAAAGGGCGTGAAATCCTCGGATGGTGCTAACAGGATGAAATTTGTTGGTCTGTCTCCATATTGGTTTAATGCTGCAGAAGGCAGTGCTGTACAGAATACAGTGGATATGCAGTCCTTGTTTCTTTTGACAGGACCAAACGGAGGTGGTAAATCTAGTTTGCTTCGATCAATCTGTGCATCTGCATTACTTGGAATATGTGGACTTATGGTTCCTGCAGAATCAGCTTTGATTCCTAACTTCGATTCTATAATGCTTCACATGAAATCTTACGATAGTCCTGCTGATGGAAAAAGTTCATTTCAGGTGGAAATGTCAGAAATCCGGTCCCTTGTAACTGGAGCTTCATCAAGAAGCCTTGTGCTCGTAGATGAAATATGTCGAGGAACAGAAACAGCGAAGGGTGCTTGTATTGCTGGAAGCATTGTTGAAACTCTTGATAGAATTGGTTGTCTTGGAATTGTGTCCACGCATTTGCATGGCATATTTGATTTGCCACTTGATACCAGCAATACCGTGTATAAAGCAATGGGAACAGAGTATGTGGATGGACGAACAAAACCAACTTGGAGGTTGATAGATGGGATTTGCAGAGAAAGTCTTGCTTTTGAAACAGCCAAGAAGGAAGGAATCCCTGAAAGTATAATCCAAAGAGCTGAAGACCTGTATTTTTCAGCTTATGCTAAAGGAGTTATTTCAGGAAAGACAGTCAACAGTGTCGGACAGTTTTCTTCTGATAGGATTGTTAATGATTCTGATGAAGCCCATTTATCGAGTGGAACCACAGCTTCTCTTCATCCTAGTACCCATTCAACAAAGGCAGTGGATACTGTGGAGAAGAAAGATATTGAAAATGCTATTACCATGATATGCCAGAAGAAGCTGATTGAGCTCTACAAACAGAAAAACACATCAGAAGTTGTATCATTCCACTGTGTTGCCATTGGTGCCAGGGAACAGCCACCTCCATCAACAATCAGTGCTTCATGTGTCTATGTGATGTTGAGACCGGACAAGAAGCTATATGTTGGAGTGACGGATGATCTTGAAAGCCGAATCCGTTCACATCGTTCAAAGGAAGGAATGGACAATGCTGCTTTTCTTTATTTCATAGTCCCTGGAAAGAGTATTGCTTGCTTACTGGAAACACTTCTCATCAACCAACTTCCTATTAAAGGATTCAAACTGACAAATGTGTCTGATGGTAAGCATCGGAATTTCGGCACAACCAATCTCTCTCTGGAAAGTGTGACTGTTCATTAA
Protein:  
MYWLATRNAVVSLPKWRSFALLLRAPFKCSSLGLSPPPLRIGQAQPIYCFKNPKGTARNSKKSKASNSVLDDKDLSHIIWWKENLQRCKKPSTVNLVKRLMYSNLLGLDASLKNGSLKEGNLNWEILQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSVPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKGRFISGHARPGSPYVFGLVGVDHDLEFPEPMPVVGISQSARGYCMISVLETMKTYSLEDGLTEEALVTKLRTCQYHHLFLHSSLRHNSSGTCRWGEYGRGGLLWGECNGRYFEWFEGDPVTELLFKVRELYGLDDKVGFRNAYVSSENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCTGLPELYVRDMLLNPPAYEIASTIQATCKLMSNITCSIPEFTCVSSAKLVKLLEQKEANHIEFCRIKNVLDEILFMYRNSELNEILKSLMDPAWMATGLKIDFETLVNECEWASGRISEMISLDGESDQKISSCPVVPSEFFEDMESSWKGRVKRVHIEEEFSEVEKAAQALSLAVTEDFIPIISRIKATTSPFGGPKGEILYAREHEAVWFKGKRFAPAVWAGTPGEEQIKQLKPAVDSKGRKVGEEWFTTIKLEDALTRYHDAGEKAKAKVLELFRGLSAELQTKVNILVFASMVLVIAKALFAHVSEGRRRKWVFPTLTGFNDSKGVKSSDGANRMKFVGLSPYWFNAAEGSAVQNTVDMQSLFLLTGPNGGGKSSLLRSICASALLGICGLMVPAESALIPNFDSIMLHMKSYDSPADGKSSFQVEMSEIRSLVTGASSRSLVLVDEICRGTETAKGACIAGSIVETLDRIGCLGIVSTHLHGIFDLPLDTSNTVYKAMGTEYVDGRTKPTWRLIDGICRESLAFETAKKEGIPESIIQRAEDLYFSAYAKGVISGKTVNSVGQFSSDRIVNDSDEAHLSSGTTASLHPSTHSTKAVDTVEKKDIENAITMICQKKLIELYKQKNTSEVVSFHCVAIGAREQPPPSTISASCVYVMLRPDKKLYVGVTDDLESRIRSHRSKEGMDNAAFLYFIVPGKSIACLLETLLINQLPIKGFKLTNVSDGKHRNFGTTNLSLESVTVH